publications

2022

1. Single-cell measurements and modelling reveal substantial organic carbon acquisition by Prochlorococcus

   Zhen Wu#, Dikla Aharonovich#, Dalit Roth-Rosenberg, Osnat Weissberg, Tal Luzzatto-Knaan, Angela Vogts, Luca Zoccarato, Falk Eigemann, Hans-Peter Grossart, Maren Voss, Michael J. Follows*, and Daniel Sher*

   Nature Microbiology (2022)

   HTML PDF
2. Imbalance of global nutrient cycles exacerbated by the greater retention of phosphorus over nitrogen in lakes

   Zhen Wu, Jincheng Li, Yanxin Sun, Joesp Penuelas, Jilin Huang, Jordi Sardans, Qingsong Jiang, Jacques Finlay, Gregory L Britten, Michael J Follows, Wei Gao, Boqiang Qin, Jinren Ni, Shouliang Huo, and Yong Liu*

   Nature Geoscience (2022)

   HTML PDF
3. PlanktonIndividuals.jl: A GPU supported individual-based phytoplankton life cycle model

   Zhen Wu, and Gael Forget

   Journal of Open Source Software (2022)

   HTML Code
4. A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series

   Jann Paul Mattern#, Kristof Glauninger#, Gregory L Britten, John R Casey, Sangwon Hyun, Zhen Wu, E Virginia Armbrust, Zaid Harchaoui, and François Ribalet*

   PLOS Computational Biology (2022)

   HTML PDF

2021

1. Modeling Photosynthesis and Exudation in Subtropical Oceans

   Zhen Wu*, Stephanie Dutkiewicz, Oliver Jahn, Daniel Sher, Angelicque White, and Michael J Follows

   Global Biogeochemical Cycles (2021)

   HTML PDF

2020

1. Seasonal algal blooms support sediment release of phosphorus via positive feedback in a eutrophic lake: Insights from a nutrient flux tracking modeling

   Rui Zou#, Zhen Wu#, Lei Zhao, James J Elser, Yanhong Yu, Yihui Chen, and Yong Liu*

   Ecological Modelling (2020)

   HTML PDF
2. What maintains seasonal nitrogen limitation in hyper-eutrophic Lake Dianchi? Insights from stoichiometric three-dimensional numerical modeling

   Zhen Wu, Rui Zou, Qingsong Jiang, James J Elser, Lei Zhao, Rui Ye, and Yong Liu*

   Aquatic Sciences (2020)

   HTML PDF

2019

1. Seasonal pattern of nutrient limitation in a eutrophic lake and quantitative analysis of the impacts from internal nutrient cycling

   Mengzhu Wang, Xiwen Xu, Zhen Wu, Xiaoqian Zhang, Peizhe Sun, Yingting Wen, Zhen Wang, Xuebin Lu, Wei Zhang, Xuejun Wang, and Yindong* Tong

   Environmental science & technology (2019)

   HTML PDF
2. Denitrification and the controlling factors in Yunnan Plateau Lakes (China): exploring the role of enhanced internal nitrogen cycling by algal blooms

   Sifeng Wu, Zhen Wu, Zhongyao Liang, Yong Liu*, and Yilin Wang

   Journal of Environmental Sciences (2019)

   HTML PDF

2018

1. Identification of watershed priority management areas under water quality constraints: a simulation-optimization approach with ideal load reduction

   Feifei Dong, Yong Liu*, Zhen Wu, Yihui Chen, and Huaicheng Guo

   Journal of Hydrology (2018)

   HTML PDF
2. Seasonal and spatial dynamics of denitrification rate and denitrifier community in constructed wetland treating polluted river water

   Bingxin Li, Jianfei Chen, Zhen Wu, Sifeng Wu, Shuguang Xie*, and Yong Liu*

   International Biodeterioration & Biodegradation (2018)

   HTML PDF
3. Nitrifying activity and ammonia-oxidizing microorganisms in a constructed wetland treating polluted surface water

   Bingxin Li, Yuyin Yang, Jianfei Chen, Zhen Wu, Yong Liu, and Shuguang Xie*

   Science of the Total Environment (2018)

   HTML PDF

2017

1. Internal cycling, not external loading, decides the nutrient limitation in eutrophic lake: A dynamic model with temporal Bayesian hierarchical inference

   Zhen Wu, Yong Liu*, Zhongyao Liang, Sifeng Wu, and Huaicheng Guo

   Water Research (2017)

   HTML PDF
2. Spatio-temporal shifts in the archaeal community of a constructed wetland treating river water

   Bingxin Li, Huili Chen, Ningning Li, Zhen Wu, Zongguo Wen, Shuguang Xie*, and Yong Liu*

   Science of the Total Environment (2017)

   HTML PDF
3. Vertical profiles of water and sediment denitrifiers in two plateau freshwater lakes

   Guozhu Mao, Ling Chen, Yuyin Yang, Zhen Wu, Tianli Tong, Yong Liu, and Shuguang Xie*

   Applied microbiology and biotechnology (2017)

   HTML PDF

2016

1. Ammonia-oxidizing archaea and bacteria in water columns and sediments of a highly eutrophic plateau freshwater lake

   Yuyin Yang, Ningning Li, Qun Zhao, Mengxi Yang, Zhen Wu, Shuguang Xie*, and Yong Liu*

   Environmental Science and Pollution Research (2016)

   HTML PDF
2. Spatiotemporal variation of planktonic and sediment bacterial assemblages in two plateau freshwater lakes at different trophic status

   Yu Dai, Yuyin Yang, Zhen Wu, Qiuyuan Feng, Shuguang Xie*, and Yong Liu*

   Applied Microbiology and Biotechnology (2016)

   HTML PDF
3. Distribution of bacterial communities across plateau freshwater lake and upslope soils

   Yihui Chen, Yu Dai, Yilin Wang, Zhen Wu, Shuguang Xie*, and Yong Liu*

   Journal of Environmental Sciences (2016)

   HTML
4. Temporal and spatial dynamics of archaeal communities in two freshwater lakes at different trophic status

   Yuyin Yang, Yu Dai, Zhen Wu, Shuguang* Xie, and Yong* Liu

   Frontiers in microbiology (2016)

   HTML PDF

2015

1. Methanotrophic community abundance and composition in plateau soils with different plant species and plantation ways

   Yu Dai, Zhen Wu, Shuguang Xie*, and Yong Liu*

   Applied microbiology and biotechnology (2015)

   HTML PDF
2. Distribution of ammonia-oxidizing archaea and bacteria in plateau soils across different land use types

   Jingxu Zhang, Yu Dai, Yilin Wang, Zhen Wu, Shuguang Xie*, and Yong Liu*

   Applied microbiology and biotechnology (2015)

   HTML PDF
3. Activity, abundance and structure of ammonia-oxidizing microorganisms in plateau soils

   Yu Dai, Zhen Wu, Qiheng Zhou, Qun Zhao, Ningning Li, Shuguang Xie*, and Yong Liu*

   Research in microbiology (2015)

   HTML PDF

1. Evaluating the implications of mixotrophy in Prochlorococcus using an Individual-based Modeling approach

   Zhen Wu, Daniel Sher, Osnat Weissberg, and Michael J. Follows

   (2021)
2. Modeling photosynthesis and exudation of DOM in subtropical oceans

   Zhen Wu, Michael J Follows, and Stephanie Dutkiewicz

   (2020)